|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
extern "C" {
|
|
Toshihiro Shimizu |
890ddd |
#include "slu_ddefs.h"
|
|
Toshihiro Shimizu |
890ddd |
#include "slu_util.h"
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
#include <algorithm></algorithm>
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
#include "tlin/tlin_cblas_wrap.h"
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
#include "tlin/tlin_superlu_wrap.h"
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
// Preliminaries
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
d1f6c4 |
struct tlin::SuperMatrix final : public ::SuperMatrix {};
|
|
Shinya Kitaoka |
d1f6c4 |
struct tlin::superlu_options_t final : public ::superlu_options_t {};
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//=======================================================================
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
namespace {
|
|
Toshihiro Shimizu |
890ddd |
static const tlin::spmat::HashMap::size_t neg = -1;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
bool initialized = false;
|
|
Toshihiro Shimizu |
890ddd |
static tlin::superlu_options_t defaultOpt;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
struct DefaultOptsInitializer {
|
|
Shinya Kitaoka |
120a6e |
DefaultOptsInitializer() {
|
|
Shinya Kitaoka |
120a6e |
set_default_options(&defaultOpt);
|
|
Shinya Kitaoka |
120a6e |
defaultOpt.PrintStat = NO;
|
|
Shinya Kitaoka |
120a6e |
}
|
|
Toshihiro Shimizu |
890ddd |
} _instance;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
inline bool rowLess(const tlin::spmat::HashMap::BucketNode *a,
|
|
Shinya Kitaoka |
120a6e |
const tlin::spmat::HashMap::BucketNode *b) {
|
|
Shinya Kitaoka |
120a6e |
return a->m_key.first < b->m_key.first;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
// SuperLU-specific Functions
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::allocS(SuperMatrix *&A, int rows, int cols, int nnz) {
|
|
Shinya Kitaoka |
120a6e |
A = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Shinya Kitaoka |
120a6e |
double *values = doubleMalloc(nnz);
|
|
Shinya Kitaoka |
120a6e |
int *rowind = intMalloc(nnz);
|
|
Shinya Kitaoka |
120a6e |
int *colptr = intMalloc(cols + 1);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
dCreate_CompCol_Matrix(A, rows, cols, nnz, values, rowind, colptr, SLU_NC,
|
|
Shinya Kitaoka |
120a6e |
SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::allocD(SuperMatrix *&A, int rows, int cols) {
|
|
Shinya Kitaoka |
120a6e |
A = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
double *values = doubleMalloc(rows * cols * sizeof(double));
|
|
Shinya Kitaoka |
120a6e |
dCreate_Dense_Matrix(A, rows, cols, values, rows, SLU_DN, SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::allocS(SuperMatrix *&A, int rows, int cols, int nnz, int *colptr,
|
|
Shinya Kitaoka |
120a6e |
int *rowind, double *values) {
|
|
Shinya Kitaoka |
120a6e |
A = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Shinya Kitaoka |
120a6e |
dCreate_CompCol_Matrix(A, rows, cols, nnz, values, rowind, colptr, SLU_NC,
|
|
Shinya Kitaoka |
120a6e |
SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::allocD(SuperMatrix *&A, int rows, int cols, int lda,
|
|
Shinya Kitaoka |
120a6e |
double *values) {
|
|
Shinya Kitaoka |
120a6e |
A = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Shinya Kitaoka |
120a6e |
dCreate_Dense_Matrix(A, rows, cols, values, lda, SLU_DN, SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::freeS(SuperMatrix *m) {
|
|
Shinya Kitaoka |
120a6e |
if (!m) return;
|
|
Shinya Kitaoka |
120a6e |
Destroy_CompCol_Matrix(m);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(m);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::freeD(SuperMatrix *m) {
|
|
Shinya Kitaoka |
120a6e |
if (!m) return;
|
|
Shinya Kitaoka |
120a6e |
Destroy_Dense_Matrix(m);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(m);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::createS(SuperMatrix &A, int rows, int cols, int nnz) {
|
|
Shinya Kitaoka |
120a6e |
double *values = doubleMalloc(nnz);
|
|
Shinya Kitaoka |
120a6e |
int *rowind = intMalloc(nnz);
|
|
Shinya Kitaoka |
120a6e |
int *colptr = intMalloc(cols + 1);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
dCreate_CompCol_Matrix(&A, rows, cols, nnz, values, rowind, colptr, SLU_NC,
|
|
Shinya Kitaoka |
120a6e |
SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::createD(SuperMatrix &A, int rows, int cols) {
|
|
Shinya Kitaoka |
120a6e |
double *values = doubleMalloc(rows * cols * sizeof(double));
|
|
Shinya Kitaoka |
120a6e |
dCreate_Dense_Matrix(&A, rows, cols, values, rows, SLU_DN, SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::createS(SuperMatrix &A, int rows, int cols, int nnz, int *colptr,
|
|
Shinya Kitaoka |
120a6e |
int *rowind, double *values) {
|
|
Shinya Kitaoka |
120a6e |
dCreate_CompCol_Matrix(&A, rows, cols, nnz, values, rowind, colptr, SLU_NC,
|
|
Shinya Kitaoka |
120a6e |
SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::createD(SuperMatrix &A, int rows, int cols, int lda,
|
|
Shinya Kitaoka |
120a6e |
double *values) {
|
|
Shinya Kitaoka |
120a6e |
dCreate_Dense_Matrix(&A, rows, cols, values, lda, SLU_DN, SLU_D, SLU_GE);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::destroyS(SuperMatrix &A, bool destroyData) {
|
|
Shinya Kitaoka |
120a6e |
if (destroyData)
|
|
Shinya Kitaoka |
120a6e |
Destroy_CompCol_Matrix(&A);
|
|
Shinya Kitaoka |
120a6e |
else
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(A.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::destroyD(SuperMatrix &A, bool destroyData) {
|
|
Shinya Kitaoka |
120a6e |
if (destroyData)
|
|
Shinya Kitaoka |
120a6e |
Destroy_Dense_Matrix(&A);
|
|
Shinya Kitaoka |
120a6e |
else
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(A.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::freeF(SuperFactors *F) {
|
|
Shinya Kitaoka |
120a6e |
if (!F) return;
|
|
Shinya Kitaoka |
120a6e |
Destroy_SuperNode_Matrix(F->L);
|
|
Shinya Kitaoka |
120a6e |
Destroy_CompCol_Matrix(F->U);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(F->L);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(F->U);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(F->perm_r);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(F->perm_c);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(F);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::readDN(SuperMatrix *A, int &lda, double *&values) {
|
|
Shinya Kitaoka |
120a6e |
assert(A->Stype == SLU_DN);
|
|
Shinya Kitaoka |
120a6e |
DNformat *storage = (DNformat *)A->Store;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
lda = storage->lda;
|
|
Shinya Kitaoka |
120a6e |
values = (double *)storage->nzval;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::readNC(SuperMatrix *A, int &nnz, int *&colptr, int *&rowind,
|
|
Shinya Kitaoka |
120a6e |
double *&values) {
|
|
Shinya Kitaoka |
120a6e |
assert(A->Stype == SLU_NC); // Only SLU_NC (CCS) format is supported here
|
|
Shinya Kitaoka |
120a6e |
NCformat *storage = (NCformat *)A->Store;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
nnz = storage->nnz;
|
|
Shinya Kitaoka |
120a6e |
values = (double *)storage->nzval;
|
|
Shinya Kitaoka |
120a6e |
rowind = (int *)storage->rowind;
|
|
Shinya Kitaoka |
120a6e |
colptr = (int *)storage->colptr;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::traduceD(const mat &m, SuperMatrix *&A) {
|
|
Shinya Kitaoka |
120a6e |
int rows = m.rows(), cols = m.cols();
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!A) allocD(A, rows, cols);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
int lda;
|
|
Shinya Kitaoka |
120a6e |
double *Avalues = 0;
|
|
Shinya Kitaoka |
120a6e |
readDN(A, lda, Avalues);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
assert(A->nrow == rows && A->ncol == cols && lda == rows);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
memcpy(Avalues, m.values(), rows * cols * sizeof(double));
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::traduceS(spmat &m, SuperMatrix *&A) {
|
|
Shinya Kitaoka |
120a6e |
int rows = m.rows(), cols = m.cols(), nnz = (int)m.entries().size();
|
|
Shinya Kitaoka |
120a6e |
spmat::HashMap &entries = m.entries();
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Build or extract pointers to out's data
|
|
Shinya Kitaoka |
120a6e |
double *values;
|
|
Shinya Kitaoka |
120a6e |
int *rowind, *colptr;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!A) allocS(A, rows, cols, nnz);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Retrieve NC arrays from A
|
|
Shinya Kitaoka |
120a6e |
int Annz;
|
|
Shinya Kitaoka |
120a6e |
readNC(A, Annz, colptr, rowind, values);
|
|
Shinya Kitaoka |
120a6e |
assert(A->nrow == rows && A->ncol == cols && Annz == nnz);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Rehash to cols buckets
|
|
Shinya Kitaoka |
120a6e |
if (entries.hashFunctor().m_cols != cols) entries.hashFunctor().m_cols = cols;
|
|
Shinya Kitaoka |
120a6e |
entries.rehash(cols);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Copy each bucket to the corresponding col
|
|
Shinya Kitaoka |
120a6e |
const std::vector<spmat::hashmap::size_t> &buckets = m.entries().buckets();</spmat::hashmap::size_t>
|
|
Shinya Kitaoka |
120a6e |
const tcg::list<spmat::hashmap::bucketnode> &nodes = m.entries().items();</spmat::hashmap::bucketnode>
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
std::vector<const *="" spmat::hashmap::bucketnode=""> colEntries;</const>
|
|
Shinya Kitaoka |
120a6e |
std::vector<const *="" spmat::hashmap::bucketnode="">::size_type j, size;</const>
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
double *currVal = values;
|
|
Shinya Kitaoka |
120a6e |
int *currRowind = rowind;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
for (int i = 0; i < cols; ++i) {
|
|
Shinya Kitaoka |
120a6e |
colptr[i] = (int)(currVal - values);
|
|
Shinya Kitaoka |
120a6e |
spmat::HashMap::size_t nodeIdx = buckets[i];
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Retrieve all column entry pointers.
|
|
Shinya Kitaoka |
120a6e |
colEntries.clear();
|
|
Shinya Kitaoka |
120a6e |
while (nodeIdx != neg) {
|
|
Shinya Kitaoka |
120a6e |
const spmat::HashMap::BucketNode &node = nodes[nodeIdx];
|
|
Shinya Kitaoka |
120a6e |
colEntries.push_back(&node);
|
|
Shinya Kitaoka |
120a6e |
nodeIdx = nodes[nodeIdx].m_next;
|
|
Shinya Kitaoka |
120a6e |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Sort them by row
|
|
Shinya Kitaoka |
120a6e |
std::sort(colEntries.begin(), colEntries.end(), rowLess);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Finally, write them in the SuperMatrix
|
|
Shinya Kitaoka |
120a6e |
size = colEntries.size();
|
|
Shinya Kitaoka |
120a6e |
for (j = 0; j < size; ++j) {
|
|
Shinya Kitaoka |
120a6e |
const spmat::HashMap::BucketNode &node = *colEntries[j];
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
*currRowind = node.m_key.first;
|
|
Shinya Kitaoka |
120a6e |
*currVal = node.m_val;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
++currVal, ++currRowind;
|
|
Shinya Kitaoka |
120a6e |
}
|
|
Shinya Kitaoka |
120a6e |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
colptr[cols] = nnz;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::traduceD(const tlin::sparse_matrix<double> &m, SuperMatrix *&A) {</double>
|
|
Shinya Kitaoka |
120a6e |
int rows = m.rows(), cols = m.cols();
|
|
Shinya Kitaoka |
120a6e |
const spmat::HashMap &entries = m.entries();
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Build or extract pointers to out's data
|
|
Shinya Kitaoka |
120a6e |
double *values;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!A) allocD(A, rows, cols);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Retrieve DN arrays from A
|
|
Shinya Kitaoka |
120a6e |
int lda;
|
|
Shinya Kitaoka |
120a6e |
readDN(A, lda, values);
|
|
Shinya Kitaoka |
120a6e |
assert(A->nrow == rows && A->ncol == cols && lda == rows);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
// Copy each value in entries to A
|
|
Shinya Kitaoka |
120a6e |
spmat::HashMap::const_iterator it;
|
|
Shinya Kitaoka |
120a6e |
for (it = entries.begin(); it != entries.end(); ++it)
|
|
Shinya Kitaoka |
120a6e |
values[it->m_key.second * rows + it->m_key.first] = it->m_val;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::factorize(SuperMatrix *A, SuperFactors *&F, superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
assert(A->nrow == A->ncol);
|
|
Shinya Kitaoka |
120a6e |
int n = A->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!F) F = (SuperFactors *)SUPERLU_MALLOC(sizeof(SuperFactors));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!opt) opt = &defaultOpt;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
F->perm_c = intMalloc(n);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
get_perm_c(3, A, F->perm_c);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix AC;
|
|
Shinya Kitaoka |
120a6e |
int *etree = intMalloc(n);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
sp_preorder(opt, A, F->perm_c, etree, &AC);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
F->L = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Shinya Kitaoka |
120a6e |
F->U = (SuperMatrix *)SUPERLU_MALLOC(sizeof(SuperMatrix));
|
|
Shinya Kitaoka |
120a6e |
F->perm_r = intMalloc(n);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperLUStat_t stat;
|
|
Shinya Kitaoka |
120a6e |
StatInit(&stat);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
int result;
|
|
Shinya Kitaoka |
120a6e |
dgstrf(opt, &AC, sp_ienv(1), sp_ienv(2), etree, NULL, 0, F->perm_c, F->perm_r,
|
|
Shinya Kitaoka |
120a6e |
F->L, F->U, &stat, &result);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
StatFree(&stat);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
Destroy_CompCol_Permuted(&AC);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(etree);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (result != 0) freeF(F), F = 0;
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperFactors *F, SuperMatrix *BX, superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
assert(F);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!opt) opt = &defaultOpt;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperLUStat_t stat;
|
|
Shinya Kitaoka |
120a6e |
StatInit(&stat);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
int result;
|
|
Shinya Kitaoka |
120a6e |
dgstrs(NOTRANS, F->L, F->U, F->perm_c, F->perm_r, BX, &stat, &result);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
StatFree(&stat);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperFactors *F, SuperMatrix *B, SuperMatrix *&X,
|
|
Shinya Kitaoka |
120a6e |
superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
if (!X) allocD(X, B->nrow, B->ncol);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
double *Bvalues = 0, *Xvalues = 0;
|
|
Shinya Kitaoka |
120a6e |
int lda;
|
|
Shinya Kitaoka |
120a6e |
readDN(B, lda, Bvalues);
|
|
Shinya Kitaoka |
120a6e |
readDN(X, lda, Xvalues);
|
|
Shinya Kitaoka |
120a6e |
memcpy(Xvalues, Bvalues, B->nrow * B->ncol * sizeof(double));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
solve(F, X, opt);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperMatrix *A, SuperMatrix *BX, superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
assert(A->nrow == A->ncol);
|
|
Shinya Kitaoka |
120a6e |
int n = A->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!opt) opt = &defaultOpt;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix L, U;
|
|
Shinya Kitaoka |
120a6e |
int *perm_c, *perm_r;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
perm_c = intMalloc(n);
|
|
Shinya Kitaoka |
120a6e |
perm_r = intMalloc(n);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperLUStat_t stat;
|
|
Shinya Kitaoka |
120a6e |
StatInit(&stat);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
int result;
|
|
Shinya Kitaoka |
120a6e |
dgssv(opt, A, perm_c, perm_r, &L, &U, BX, &stat, &result);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
Destroy_SuperNode_Matrix(&L);
|
|
Shinya Kitaoka |
120a6e |
Destroy_CompCol_Matrix(&U);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(perm_r);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(perm_c);
|
|
Shinya Kitaoka |
120a6e |
StatFree(&stat);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperMatrix *A, SuperMatrix *B, SuperMatrix *&X,
|
|
Shinya Kitaoka |
120a6e |
superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
if (!X) allocD(X, B->nrow, B->ncol);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
double *Bvalues = 0, *Xvalues = 0;
|
|
Shinya Kitaoka |
120a6e |
int lda;
|
|
Shinya Kitaoka |
120a6e |
readDN(B, lda, Bvalues);
|
|
Shinya Kitaoka |
120a6e |
readDN(X, lda, Xvalues);
|
|
Shinya Kitaoka |
120a6e |
memcpy(Xvalues, Bvalues, B->nrow * B->ncol * sizeof(double));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
solve(A, X, opt);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperFactors *F, double *bx, superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix BX;
|
|
Shinya Kitaoka |
120a6e |
int rows = F->L->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
createD(BX, rows, 1, rows, bx);
|
|
Shinya Kitaoka |
120a6e |
tlin::solve(F, &BX, opt);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(BX.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperFactors *F, double *b, double *&x,
|
|
Shinya Kitaoka |
120a6e |
superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix B, X;
|
|
Shinya Kitaoka |
120a6e |
int rows = F->L->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!x) x = (double *)malloc(rows * sizeof(double));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
createD(B, rows, 1, rows, b);
|
|
Shinya Kitaoka |
120a6e |
createD(X, rows, 1, rows, x);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix *Xptr = &X; //&X is const
|
|
Shinya Kitaoka |
120a6e |
tlin::solve(F, &B, Xptr, opt);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(B.Store);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(X.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperMatrix *A, double *bx, superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix BX;
|
|
Shinya Kitaoka |
120a6e |
int rows = A->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
createD(BX, rows, 1, rows, bx);
|
|
Shinya Kitaoka |
120a6e |
tlin::solve(A, &BX, opt);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(BX.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::solve(SuperMatrix *A, double *b, double *&x,
|
|
Shinya Kitaoka |
120a6e |
superlu_options_t *opt) {
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix B, X;
|
|
Shinya Kitaoka |
120a6e |
int rows = A->nrow;
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!x) x = (double *)malloc(rows * sizeof(double));
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
createD(B, rows, 1, rows, b);
|
|
Shinya Kitaoka |
120a6e |
createD(X, rows, 1, rows, x);
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix *Xptr = &X; //&X is const
|
|
Shinya Kitaoka |
120a6e |
tlin::solve(A, &B, Xptr, opt);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(B.Store);
|
|
Shinya Kitaoka |
120a6e |
SUPERLU_FREE(X.Store);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
// BLAS-related Functions
|
|
Toshihiro Shimizu |
890ddd |
//*************************************************************************
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::multiplyS(const SuperMatrix *A, const double *x, double *&y) {
|
|
Shinya Kitaoka |
120a6e |
/*
|
|
Shinya Kitaoka |
120a6e |
int sp_dgemv (char *, double, SuperMatrix *, double *,
|
|
Shinya Kitaoka |
120a6e |
int, double, double *, int);
|
|
Shinya Kitaoka |
120a6e |
*/
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
if (!y) {
|
|
Shinya Kitaoka |
120a6e |
y = (double *)malloc(A->nrow * sizeof(double));
|
|
Shinya Kitaoka |
120a6e |
memset(y, 0, A->nrow * sizeof(double));
|
|
Shinya Kitaoka |
120a6e |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
SuperMatrix *_A = const_cast<supermatrix *="">(A);</supermatrix>
|
|
Shinya Kitaoka |
120a6e |
double *_x = const_cast<double *="">(x);</double>
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
sp_dgemv("N", 1.0, _A, _x, 1, 1.0, y, 1);
|
|
Toshihiro Shimizu |
890ddd |
}
|
|
Toshihiro Shimizu |
890ddd |
|
|
Toshihiro Shimizu |
890ddd |
//---------------------------------------------------------------
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
void tlin::multiplyD(const SuperMatrix *A, const double *x, double *&y) {
|
|
Shinya Kitaoka |
120a6e |
int lda;
|
|
Shinya Kitaoka |
120a6e |
double *values;
|
|
Shinya Kitaoka |
120a6e |
tlin::readDN(const_cast<supermatrix *="">(A), lda, values);</supermatrix>
|
|
Toshihiro Shimizu |
890ddd |
|
|
Shinya Kitaoka |
120a6e |
tlin::multiply(A->nrow, A->ncol, values, x, y);
|
|
Toshihiro Shimizu |
890ddd |
}
|